Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015948242.1_cds_XP_016489558.1_80072
CDS Infomation

[gene=LOC107809437] [db_xref=GeneID:107809437] [protein=pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like] [protein_id=XP_016489558.1] [location=join(34845..35183,36023..36429,36692..37382)] [gbkey=CDS]
Sequence

ATGGCGTCCAATCCAATTCCTCCTCCATCATTCAGACCACCAAGAACCGACCCATTAACC
CAAAAAAATCTCATCATACCCGGGTCCAAATCCATTGACCCGAATTCTTCACTGAATCTT
GAGAAGCTAAAGGAGAAAGAAGCAAAAGAGAGAAAAGAAGAAACCAATAAAAAGATAGCT
TCACAAAAAGCCATATCCATAATTCTACGTAGAGAAGCTACAAAAGCAGTTATTGAGTAT
AAGAAGAAAAAGGGGAATTCTAAGAAGCTTTTGCCACGTACTGTTCTTGAAGCTCTTCAC
GAACGTATTACTGCTTTGCGTTGGGAATCTGCTCTCAAGGTCTTTGAACTCCTCCAGGAG
CAGCTGTGGTACAGGCCCAACGCGGGTATTTATATCAAATTAATCGTCATGCTTGGGAAA
TGTAAGCAACCCGAAAAAGCTCAATCCCTATTTGAGATGATGGTGGAAGAAGGCTGTGTC
GTGAATCAAGAAGCTTACACTGCTCTTTTGTCTGCCTATAGCCGCAGTGGTCTTTTTCAC
AAAGCTTTTTCTATCCTAGAAGAGATGAAGAACACTCCAAACTGCCAACCCGATGTCTTC
ACATATACCATCCTGATGAAGTCCTGCCTTCAGGTTTATGACTTCGATAAAGTGCAAATC
CTGCTTTCGGACATGGATTTTATGGGAATTAAACCCAATACAGTAACATATAATACACTC
ATTGATTCCTATGGCAAAGCAAAAAGGTTCAAAGAGATGGAATCCACACTTGTTGAAATG
CTGCGGCGAAGAGACTGCAAGCCAGATGTGTGGACCATGAACTCAACATTGAGAGCATTT
GGTGGCAGTGGGCAAATAGAAATGATGGAAAAATGCTACGAGAAGTTTCAGAGTGCTGGA
ATTGAACCAAGCATTAAGACATTTAACATACTCTTAGATTCATATGGGAAAACAGAAAAT
TATGAGAAAATGAGTGCTGTAATGGAGTTTATGCAGAAATACCATTTTTCATGGACGATA
GTTACCTATAATATCGTAATAGATGCATTTGGAAGGGCTGGGGATTTAAAGCAGATGGAA
TTTCTTTTTAGGCTGATGCAGTCTGAGAGGATAAAACCAAACTGTGTTACTCTTTGTTCA
CTTGTAAGAGCATATGGGAAGGCTGGTAAAGCTGAAAAAGTCGGAGCTATTTTGCGATTC
ATTGAGAATTCTGACGTGGCGCTTGACACAGTGTTTTTTAACTGCCTAGTGGATGCGTAT
GGGATGATGGGATGCTTTGTGGAGATGAAAGGGGTACTTGAGATGATGGAAAGAAGCGGA
TGTAAGCCCGATAAGATAACGTACAGAAGTATGATTAAAGCCTATTCAGTAAATGGAATG
AGTAGCAAAGCGACGGAGATGCGAAACCTACTTGCCTCATTGGAAAAGGCGCGATAG

Peptide Sequence

PEP ID

XP_016489558.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Nicotiana tabacum]
Sequence

MASNPIPPPSFRPPRTDPLTQKNLIIPGSKSIDPNSSLNLEKLKEKEAKERKEETNKKIA
SQKAISIILRREATKAVIEYKKKKGNSKKLLPRTVLEALHERITALRWESALKVFELLQE
QLWYRPNAGIYIKLIVMLGKCKQPEKAQSLFEMMVEEGCVVNQEAYTALLSAYSRSGLFH
KAFSILEEMKNTPNCQPDVFTYTILMKSCLQVYDFDKVQILLSDMDFMGIKPNTVTYNTL
IDSYGKAKRFKEMESTLVEMLRRRDCKPDVWTMNSTLRAFGGSGQIEMMEKCYEKFQSAG
IEPSIKTFNILLDSYGKTENYEKMSAVMEFMQKYHFSWTIVTYNIVIDAFGRAGDLKQME
FLFRLMQSERIKPNCVTLCSLVRAYGKAGKAEKVGAILRFIENSDVALDTVFFNCLVDAY
GMMGCFVEMKGVLEMMERSGCKPDKITYRSMIKAYSVNGMSSKATEMRNLLASLEKAR

Transcript Sequence

Gene sequence data has not been registered.